Visium
Human dorsolateral prefrontal cortex
GSM9778300
silver Interactive viewer H&E major depressive disorder No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_hires_image': DataArray[cyx] (3, 1919, 2000)
│ └── 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_lowres_image': DataArray[cyx] (3, 576, 600)
├── Shapes
│ └── 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 36601)
with coordinate systems:
▸ 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1', with elements:
GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_hires_image (Images), GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_lowres_image (Images), GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1 (Shapes)
▸ 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_downscaled_hires', with elements:
GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_hires_image (Images), GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1 (Shapes)
▸ 'GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_downscaled_lowres', with elements:
GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1_lowres_image (Images), GSM9778300_MBv_100_MDD_F_Br6256-V13B23-329_D1 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("1cDBrpCso72KRpIK") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/1cDBrpCso72KRpIK
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 1cDBrpCso72KRpIK Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["1cDBrpCso72KRpIK0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Overlapping yet distinct spatiomolecular profiles across mood disorders and biological sex in the human prefrontal cortex→ 114 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Condition
- major depressive disorder
- Modality
- RNA
- Observations
- 4,992
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,919 px
- mpp
- 3.700 µm/px
- Size
- 38 MB
- Sample ID
- GSM9778300
- License
- unknown
- Published
- Oct 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB