10x Xenium
Human lung
GSM9525963
silver Interactive viewer acute myeloid leukemia No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 54370, 53881)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (54370, 53881), (27185, 26940), (13592, 13470), (6796, 6735), (3398, 3367)
│ └── 'nucleus_labels': DataTree[yx] (54370, 53881), (27185, 26940), (13592, 13470), (6796, 6735), (3398, 3367)
├── Points
│ └── 'transcripts': DataFrame with shape: (155978855, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (736414, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (736414, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (736581, 2) (2D shapes)
└── Tables
└── 'table': AnnData (736414, 5001)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("4fiKSINDul6y1d9z") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/4fiKSINDul6y1d9z
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 4fiKSINDul6y1d9z Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["4fiKSINDul6y1d9z0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Inflammatory immune modulators of AML lung infiltration and respiratory failure→ 3 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Condition
- acute myeloid leukemia
- Modality
- RNA
- Observations
- 736,414
- Transcripts
- 155,978,855
- Tier
- silver
- Size
- 7.9 GB
- Sample ID
- GSM9525963
- License
- NCBI GEO policy
- Published
- May 22, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB