Visium
Human liver
GSM8155178
bronze H&E hepatoblastoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8155178_H392_hires_image': DataArray[cyx] (3, 1935, 2000)
│ └── 'GSM8155178_H392_lowres_image': DataArray[cyx] (3, 581, 600)
├── Shapes
│ └── 'GSM8155178_H392': GeoDataFrame shape: (4049, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4049, 17943)
with coordinate systems:
▸ 'GSM8155178_H392', with elements:
GSM8155178_H392_hires_image (Images), GSM8155178_H392_lowres_image (Images), GSM8155178_H392 (Shapes)
▸ 'GSM8155178_H392_downscaled_hires', with elements:
GSM8155178_H392_hires_image (Images), GSM8155178_H392 (Shapes)
▸ 'GSM8155178_H392_downscaled_lowres', with elements:
GSM8155178_H392_lowres_image (Images), GSM8155178_H392 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("ZspHNxqYC6HG57uA") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/ZspHNxqYC6HG57uA
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid ZspHNxqYC6HG57uA Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["ZspHNxqYC6HG57uA0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics]→ 22 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- liver
- Condition
- hepatoblastoma
- Modality
- RNA
- Observations
- 4,049
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,935 px
- mpp
- 3.437 µm/px
- Size
- 26 MB
- Sample ID
- GSM8155178
- License
- unknown
- Published
- Feb 7, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB