10x Xenium
Human vestibulocochlear nerve
GSM10013109
silver Interactive viewer acoustic neuroma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37484, 31359), (1, 18742, 15679), (1, 9371, 7839), (1, 4685, 3919), (1, 2342, 1959)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (36742, 31342), (18371, 15671), (9185, 7835), (4592, 3917), (2296, 1958)
│ └── 'nucleus_labels': DataTree[yx] (35895, 31327), (17947, 15663), (8973, 7831), (4486, 3915), (2243, 1957)
├── Points
│ └── 'transcripts': DataFrame with shape: (29809653, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (181878, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (181878, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (181883, 2) (2D shapes)
└── Tables
└── 'table': AnnData (181878, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("8jCrFU6XVcdHck6C") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/8jCrFU6XVcdHck6C
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 8jCrFU6XVcdHck6C Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["8jCrFU6XVcdHck6C0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- vestibulocochlear nerve
- Condition
- acoustic neuroma
- Modality
- RNA
- Observations
- 181,878
- Transcripts
- 29,809,653
- Tier
- silver
- Size
- 1.9 GB
- Sample ID
- GSM10013109
- License
- unknown
- Published
- Sep 25, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB