10x Xenium
Mouse skin of body
GSM9524136
silver Interactive viewer melanoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 13737, 42628), (1, 6868, 21314), (1, 3434, 10657), (1, 1717, 5328), (1, 858, 2664)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (13705, 42078), (6852, 21039), (3426, 10519), (1713, 5259), (856, 2629)
│ └── 'nucleus_labels': DataTree[yx] (13223, 40162), (6611, 20081), (3305, 10040), (1652, 5020), (826, 2510)
├── Points
│ └── 'transcripts': DataFrame with shape: (47217185, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (134966, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (134966, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (134898, 2) (2D shapes)
└── Tables
└── 'table': AnnData (134966, 407)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("lDX3xODUF5ZBQtqa") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/lDX3xODUF5ZBQtqa
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid lDX3xODUF5ZBQtqa Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["lDX3xODUF5ZBQtqa0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- skin of body
- Condition
- melanoma
- Modality
- RNA
- Observations
- 134,966
- Transcripts
- 47,217,185
- Tier
- silver
- Size
- 1.5 GB
- Sample ID
- GSM9524136
- License
- unknown
- Published
- Sep 18, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB