Visium
Macaque colon
GSM9913885
bronze Interactive viewer H&E simian immunodeficiency virus infection Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9913885_08M236_IV_A_Colon3_hires_image': DataArray[cyx] (3, 2000, 1965)
│ └── 'GSM9913885_08M236_IV_A_Colon3_lowres_image': DataArray[cyx] (3, 600, 590)
├── Shapes
│ └── 'GSM9913885_08M236_IV_A_Colon3': GeoDataFrame shape: (3060, 2) (2D shapes)
└── Tables
└── 'table': AnnData (3060, 35441)
with coordinate systems:
▸ 'GSM9913885_08M236_IV_A_Colon3', with elements:
GSM9913885_08M236_IV_A_Colon3_hires_image (Images), GSM9913885_08M236_IV_A_Colon3_lowres_image (Images), GSM9913885_08M236_IV_A_Colon3 (Shapes)
▸ 'GSM9913885_08M236_IV_A_Colon3_downscaled_hires', with elements:
GSM9913885_08M236_IV_A_Colon3_hires_image (Images), GSM9913885_08M236_IV_A_Colon3 (Shapes)
▸ 'GSM9913885_08M236_IV_A_Colon3_downscaled_lowres', with elements:
GSM9913885_08M236_IV_A_Colon3_lowres_image (Images), GSM9913885_08M236_IV_A_Colon3 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("IjhwZ7uPqWMzwYzn") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/IjhwZ7uPqWMzwYzn
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid IjhwZ7uPqWMzwYzn Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["IjhwZ7uPqWMzwYzn0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium]→ 18 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- macaque
- Tissue
- colon
- Condition
- simian immunodeficiency virus infection
- Modality
- RNA
- Observations
- 3,060
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 1,965 × 2,000 px
- mpp
- 3.666 µm/px
- Size
- 32 MB
- Sample ID
- GSM9913885
- License
- unknown
- Published
- Aug 26, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB