Visium
Human small intestine
GSM9078977
bronze Interactive viewer H&E small intestine neuroendocrine neoplasm Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9078977_V13B16-367_A1_hires_image': DataArray[cyx] (3, 2000, 1935)
│ └── 'GSM9078977_V13B16-367_A1_lowres_image': DataArray[cyx] (3, 600, 581)
├── Shapes
│ └── 'GSM9078977_V13B16-367_A1': GeoDataFrame shape: (979, 2) (2D shapes)
└── Tables
└── 'table': AnnData (979, 17943)
with coordinate systems:
▸ 'GSM9078977_V13B16-367_A1', with elements:
GSM9078977_V13B16-367_A1_hires_image (Images), GSM9078977_V13B16-367_A1_lowres_image (Images), GSM9078977_V13B16-367_A1 (Shapes)
▸ 'GSM9078977_V13B16-367_A1_downscaled_hires', with elements:
GSM9078977_V13B16-367_A1_hires_image (Images), GSM9078977_V13B16-367_A1 (Shapes)
▸ 'GSM9078977_V13B16-367_A1_downscaled_lowres', with elements:
GSM9078977_V13B16-367_A1_lowres_image (Images), GSM9078977_V13B16-367_A1 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("lNKNHK3enQagI1g5") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/lNKNHK3enQagI1g5
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid lNKNHK3enQagI1g5 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["lNKNHK3enQagI1g50000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors→ 8 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- small intestine
- Condition
- small intestine neuroendocrine neoplasm
- Modality
- RNA
- Observations
- 979
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 1,935 × 2,000 px
- mpp
- 3.527 µm/px
- Size
- 18 MB
- Sample ID
- GSM9078977
- License
- unknown
- Published
- Feb 9, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB