Visium
Mouse intestine
GSM9543398
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9543398_EtOH-I_hires_image': DataArray[cyx] (3, 2000, 1251)
│ └── 'GSM9543398_EtOH-I_lowres_image': DataArray[cyx] (3, 600, 376)
├── Shapes
│ └── 'GSM9543398_EtOH-I': GeoDataFrame shape: (2489, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2489, 19465)
with coordinate systems:
▸ 'GSM9543398_EtOH-I', with elements:
GSM9543398_EtOH-I_hires_image (Images), GSM9543398_EtOH-I_lowres_image (Images), GSM9543398_EtOH-I (Shapes)
▸ 'GSM9543398_EtOH-I_downscaled_hires', with elements:
GSM9543398_EtOH-I_hires_image (Images), GSM9543398_EtOH-I (Shapes)
▸ 'GSM9543398_EtOH-I_downscaled_lowres', with elements:
GSM9543398_EtOH-I_lowres_image (Images), GSM9543398_EtOH-I (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("aIsWteeeHoUdZs44") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/aIsWteeeHoUdZs44
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid aIsWteeeHoUdZs44 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["aIsWteeeHoUdZs440000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
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Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- intestine
- Modality
- RNA
- Observations
- 2,489
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 1,251 × 2,000 px
- mpp
- 4.875 µm/px
- Size
- 35 MB
- Sample ID
- GSM9543398
- License
- unknown
- Published
- Aug 4, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB