Visium
Human breast
GSM9294638
bronze Interactive viewer H&E estrogen-receptor positive breast cancer Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9294638_UIC013_Primary_tumor_hires_image': DataArray[cyx] (3, 3000, 3000)
│ └── 'GSM9294638_UIC013_Primary_tumor_lowres_image': DataArray[cyx] (3, 600, 600)
├── Shapes
│ └── 'GSM9294638_UIC013_Primary_tumor': GeoDataFrame shape: (900, 2) (2D shapes)
└── Tables
└── 'table': AnnData (900, 18085)
with coordinate systems:
▸ 'GSM9294638_UIC013_Primary_tumor', with elements:
GSM9294638_UIC013_Primary_tumor_hires_image (Images), GSM9294638_UIC013_Primary_tumor_lowres_image (Images), GSM9294638_UIC013_Primary_tumor (Shapes)
▸ 'GSM9294638_UIC013_Primary_tumor_downscaled_hires', with elements:
GSM9294638_UIC013_Primary_tumor_hires_image (Images), GSM9294638_UIC013_Primary_tumor (Shapes)
▸ 'GSM9294638_UIC013_Primary_tumor_downscaled_lowres', with elements:
GSM9294638_UIC013_Primary_tumor_lowres_image (Images), GSM9294638_UIC013_Primary_tumor (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("EF2QHXAiMiAlUIGz") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/EF2QHXAiMiAlUIGz
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid EF2QHXAiMiAlUIGz Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["EF2QHXAiMiAlUIGz0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Translational profiling of ET-insensitive cell populations in ER+ breast cancer reveals new therapeutic vulnerabilities→ 4 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- breast
- Condition
- estrogen-receptor positive breast cancer
- Modality
- RNA
- Observations
- 900
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 3,000 × 3,000 px
- mpp
- 4.225 µm/px
- Size
- 29 MB
- Sample ID
- GSM9294638
- License
- unknown
- Published
- Oct 5, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB