10x Xenium
Mouse lung
GSM9808289
silver Interactive viewer lung adenocarcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 105344, 45470), (1, 52672, 22735), (1, 26336, 11367), (1, 13168, 5683), (1, 6584, 2841)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (105286, 43090), (52643, 21545), (26321, 10772), (13160, 5386), (6580, 2693)
│ └── 'nucleus_labels': DataTree[yx] (105248, 43072), (52624, 21536), (26312, 10768), (13156, 5384), (6578, 2692)
├── Points
│ └── 'transcripts': DataFrame with shape: (86027673, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (179948, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (179948, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (179938, 2) (2D shapes)
└── Tables
└── 'table': AnnData (179948, 5006)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("4oBdqglHK9RosoEq") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/4oBdqglHK9RosoEq
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 4oBdqglHK9RosoEq Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["4oBdqglHK9RosoEq0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- lung
- Condition
- lung adenocarcinoma
- Modality
- RNA
- Observations
- 179,948
- Transcripts
- 86,027,673
- Tier
- silver
- Size
- 3.4 GB
- Sample ID
- GSM9808289
- License
- unknown
- Published
- Jul 21, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB