10x Xenium
Mouse skin of body
GSM9524133
silver Interactive viewer melanoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 13759, 39758), (1, 6879, 19879), (1, 3439, 9939), (1, 1719, 4969), (1, 859, 2484)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (13723, 39617), (6861, 19808), (3430, 9904), (1715, 4952), (857, 2476)
│ └── 'nucleus_labels': DataTree[yx] (13323, 37637), (6661, 18818), (3330, 9409), (1665, 4704), (832, 2352)
├── Points
│ └── 'transcripts': DataFrame with shape: (21442146, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (119929, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (119929, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (119774, 2) (2D shapes)
└── Tables
└── 'table': AnnData (119929, 407)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("cDI3WI5DrUvQsnPM") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/cDI3WI5DrUvQsnPM
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid cDI3WI5DrUvQsnPM Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["cDI3WI5DrUvQsnPM0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- skin of body
- Condition
- melanoma
- Modality
- RNA
- Observations
- 119,929
- Transcripts
- 21,442,146
- Tier
- silver
- Size
- 1.1 GB
- Sample ID
- GSM9524133
- License
- unknown
- Published
- Sep 18, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB