Collections / Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis

Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis

The sympathetic nervous system coordinates the functions of diverse organs to maintain homeostasis and mounts adaptive responses to stressors. Although recent molecular and genetic studies have advanced our understanding of peripheral sympathetic neurons, the spatial and functional organization of spinal sympathetic preganglionic neurons (SPNs) during stress responses remains poorly understood. Here we establish a spatial transcriptomics (STx)-based activity atlas of mouse SPNs under distinct stress conditions. This atlas reveals the spinal segment- and sex-biased organization of SPN transcriptomic subtypes. Using immediate early gene (IEG) induction as a readout of neuronal activation, we found that different stressors, such as cold exposure and glucose deprivation, recruit different SPN transcriptomic subtypes.

Datasets10
Size~61 GB
Assay10x Xenium
Samplemouse · spinal cord
KindComparison
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse336196")
coll.ordered_artifacts.df()                 # the 10 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829813
mouse spinal cord 1.7 GB 83,912 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size1.7 GB
Obs83,912
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829818
mouse spinal cord 1.7 GB 78,138 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size1.7 GB
Obs78,138
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829814
mouse spinal cord 3.7 GB 172,130 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size3.7 GB
Obs172,130
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829815
mouse spinal cord 3.6 GB 173,341 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size3.6 GB
Obs173,341
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829817
mouse spinal cord 3.2 GB 152,358 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size3.2 GB
Obs152,358
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829816
mouse spinal cord 3.7 GB 167,694 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size3.7 GB
Obs167,694
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829822
mouse spinal cord 11 GB 618,208 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size11 GB
Obs618,208
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829820
mouse spinal cord 10 GB 556,964 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size10 GB
Obs556,964
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829821
mouse spinal cord 11 GB 591,992 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size11 GB
Obs591,992
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse spinal cord
GSM9829819
mouse spinal cord 11 GB 598,230 obs silver NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuespinal cord
Size11 GB
Obs598,230
silver NCBI GEO policy Open in Vitessce