Collections / single-cell multiomics data for the developing human pelvic girdle [spatial]

single-cell multiomics data for the developing human pelvic girdle [spatial]

Human pelvic girdle, especially the ilium is considered an evolutionary novelty. To understand the genetic architecute behind the formation of this structure, we conducted single cell multiomics across developmental stages.

Datasets28
Size~506 MB
AssayVisium
Samplehuman · ilium
KindReplicates
PMID:40866708 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse281317")
coll.ordered_artifacts.df()                 # the 28 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human ilium
GSM8618670
human ilium 14 MB 894 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size14 MB
Obs894
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618673
human ilium 14 MB 1,007 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size14 MB
Obs1,007
Magnificationother · 6.451 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618655
human ilium 23 MB 771 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size23 MB
Obs771
Magnificationother · 3.187 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618653
human ilium 4.5 MB 152 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size4.5 MB
Obs152
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618652
human ilium 19 MB 907 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size19 MB
Obs907
Magnificationother · 5.739 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618669
human ilium 36 MB 2,308 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size36 MB
Obs2,308
Magnificationother · 6.430 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618672
human ilium 7.7 MB 773 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size7.7 MB
Obs773
Magnificationother · 6.442 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618668
human ilium 22 MB 2,264 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size22 MB
Obs2,264
Magnificationother · 5.778 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618660
human ilium 15 MB 478 obs bronze
TechnologyVisium
Organismhuman
Tissueilium
Size15 MB
Obs478
bronze Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618667
human ilium 30 MB 2,310 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size30 MB
Obs2,310
Magnificationother · 5.765 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618650
human ilium 28 MB 1,386 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size28 MB
Obs1,386
Magnificationother · 3.964 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618662
human ilium 11 MB 329 obs bronze
TechnologyVisium
Organismhuman
Tissueilium
Size11 MB
Obs329
bronze Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618661
human ilium 8.0 MB 228 obs bronze
TechnologyVisium
Organismhuman
Tissueilium
Size8.0 MB
Obs228
bronze Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618663
human ilium 18 MB 784 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size18 MB
Obs784
Magnificationother · 3.471 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618654
human ilium 19 MB 1,133 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size19 MB
Obs1,133
Magnificationother · 3.280 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618651
human ilium 23 MB 1,684 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size23 MB
Obs1,684
Magnificationother · 5.794 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618659
human ilium 10 MB 159 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size10 MB
Obs159
Magnificationother · 3.277 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618658
human ilium 8.8 MB 182 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size8.8 MB
Obs182
Magnificationother · 3.470 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618656
human ilium 14 MB 436 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size14 MB
Obs436
Magnificationother · 3.221 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618646
human ilium 25 MB 1,327 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size25 MB
Obs1,327
Magnificationother · 3.872 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618647
human ilium 16 MB 907 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size16 MB
Obs907
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618649
human ilium 26 MB 1,156 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size26 MB
Obs1,156
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618664
human ilium 19 MB 856 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size19 MB
Obs856
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618648
human ilium 21 MB 1,401 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size21 MB
Obs1,401
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618665
human ilium 28 MB 1,784 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size28 MB
Obs1,784
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618666
human ilium 24 MB 1,032 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size24 MB
Obs1,032
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618671
human ilium 13 MB 1,367 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size13 MB
Obs1,367
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human ilium
GSM8618657
human ilium 8.0 MB 150 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueilium
Size8.0 MB
Obs150
bronze H&E Open in Vitessce

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