Collections / Spatial RNA sequencing of bleomycin-treated young and old mice lungs at day 14 and day 28 post injection
Spatial RNA sequencing of bleomycin-treated young and old mice lungs at day 14 and day 28 post injection
We monitored lung fibrosis formation and resolution in young and old mice by generating a series of spatial transcriptomics datasets using the 10x Genomics Visium platform
Datasets8
Size~141 MB
AssayVisium
Samplemouse · lung
KindTime course
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse234198")
coll.ordered_artifacts.df() # the 8 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 8
Mouse lung
GSM7454048
mouse lung pulmonary fibrosis 26 MB 2,383 obs silver H&E
TechnologyVisium
Organismmouse
Tissuelung
Conditionpulmonary fibrosis
Obs2,383
silver H&E
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