Collections / Spatial transcriptomic sequencing data of human small cell lung cancer

Spatial transcriptomic sequencing data of human small cell lung cancer

Small cell lung cancer is a lung tumor with extremely poor prognosis, and its tumor heterogeneity and unique microenvironment remain unclear. This study aimed to reveal the early tumorigenesis and microenvironment of small cell lung cancer by performing idle transcriptomic sequencing of patients' small cell lung cancer tissues.

Datasets4
Size~176 MB
AssayVisium
Samplehuman · lung
KindOther
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263196 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse263196")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human lung
GSM8187469
human lung small cell lung carcinoma 46 MB 3,860 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size46 MB
Obs3,860
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM8187472
human lung small cell lung carcinoma 68 MB 3,520 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size68 MB
Obs3,520
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM8187473
human lung small cell lung carcinoma 19 MB 2,655 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size19 MB
Obs2,655
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM8187470
human lung small cell lung carcinoma 42 MB 2,709 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size42 MB
Obs2,709
silver H&E Open in Vitessce

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