Collections / Integrating spatial gene expression and breast tumour morphology via deep learning

Integrating spatial gene expression and breast tumour morphology via deep learning

Datasets84
Size~13 GB
Assayspatial transcriptomics
Samplemultiple · multiple
KindComparison
10.1126/science.aaf2403 ↗
Download the whole collection
Python · lamindb 
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="doi-10.1126/science.aaf2403")
coll.ordered_artifacts.df()                 # the 84 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
About the study

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Read the abstract at the source →
Member datasets · 84
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA12
mouse brain 143 MB 264 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size143 MB
Obs264
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA81
human breast invasive ductal breast carcinoma 168 MB 548 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size168 MB
Obs548
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA56
human breast invasive ductal breast carcinoma 207 MB 597 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size207 MB
Obs597
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA86
human breast invasive ductal breast carcinoma 155 MB 434 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size155 MB
Obs434
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA11
mouse brain 79 MB 267 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size79 MB
Obs267
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA111
human breast invasive ductal breast carcinoma 137 MB 297 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size137 MB
Obs297
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA66
human breast invasive ductal breast carcinoma 167 MB 504 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size167 MB
Obs504
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA95
human breast invasive ductal breast carcinoma 180 MB 614 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size180 MB
Obs614
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA97
human breast invasive ductal breast carcinoma 161 MB 468 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size161 MB
Obs468
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA77
human breast invasive ductal breast carcinoma 99 MB 284 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size99 MB
Obs284
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA13
mouse brain 196 MB 269 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size196 MB
Obs269
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA114
human breast invasive ductal breast carcinoma 128 MB 301 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size128 MB
Obs301
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA54
human breast invasive ductal breast carcinoma 206 MB 601 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size206 MB
Obs601
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA90
human breast invasive ductal breast carcinoma 154 MB 338 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size154 MB
Obs338
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA85
human breast invasive ductal breast carcinoma 143 MB 435 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size143 MB
Obs435
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA63
human breast invasive ductal breast carcinoma 187 MB 518 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size187 MB
Obs518
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA14
mouse brain 173 MB 280 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size173 MB
Obs280
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA80
human breast invasive ductal breast carcinoma 127 MB 368 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size127 MB
Obs368
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA103
human breast invasive ductal breast carcinoma 207 MB 572 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size207 MB
Obs572
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA4
mouse brain 97 MB 282 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size97 MB
Obs282
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA10
mouse brain 98 MB 242 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size98 MB
Obs242
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA1
human breast invasive ductal breast carcinoma 104 MB 264 obs bronze H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size104 MB
Obs264
bronze H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA109
human breast invasive ductal breast carcinoma 147 MB 423 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size147 MB
Obs423
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA87
human breast invasive ductal breast carcinoma 157 MB 492 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size157 MB
Obs492
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA78
human breast invasive ductal breast carcinoma 130 MB 363 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size130 MB
Obs363
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA69
human breast invasive ductal breast carcinoma 174 MB 482 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size174 MB
Obs482
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA65
human breast invasive ductal breast carcinoma 182 MB 498 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size182 MB
Obs498
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA15
mouse brain 197 MB 267 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size197 MB
Obs267
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA112
human breast invasive ductal breast carcinoma 127 MB 292 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size127 MB
Obs292
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA68
human breast invasive ductal breast carcinoma 202 MB 478 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size202 MB
Obs478
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA100
human breast invasive ductal breast carcinoma 228 MB 695 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size228 MB
Obs695
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA76
human breast invasive ductal breast carcinoma 91 MB 283 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size91 MB
Obs283
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA79
human breast invasive ductal breast carcinoma 145 MB 362 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size145 MB
Obs362
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA116
human breast invasive ductal breast carcinoma 145 MB 357 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size145 MB
Obs357
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA94
human breast invasive ductal breast carcinoma 178 MB 603 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size178 MB
Obs603
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA51
human breast invasive ductal breast carcinoma 161 MB 421 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size161 MB
Obs421
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA113
human breast invasive ductal breast carcinoma 102 MB 318 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size102 MB
Obs318
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA5
mouse brain 98 MB 262 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size98 MB
Obs262
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA72
human breast invasive ductal breast carcinoma 177 MB 566 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size177 MB
Obs566
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA84
human breast invasive ductal breast carcinoma 151 MB 433 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size151 MB
Obs433
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA102
human breast invasive ductal breast carcinoma 208 MB 570 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size208 MB
Obs570
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA71
human breast invasive ductal breast carcinoma 210 MB 489 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size210 MB
Obs489
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA92
human breast invasive ductal breast carcinoma 146 MB 325 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size146 MB
Obs325
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA89
human breast invasive ductal breast carcinoma 151 MB 435 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size151 MB
Obs435
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA59
human breast invasive ductal breast carcinoma 165 MB 464 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size165 MB
Obs464
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA110
human breast invasive ductal breast carcinoma 144 MB 414 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size144 MB
Obs414
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA88
human breast invasive ductal breast carcinoma 155 MB 498 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size155 MB
Obs498
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA60
human breast invasive ductal breast carcinoma 127 MB 331 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size127 MB
Obs331
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA62
human breast invasive ductal breast carcinoma 115 MB 294 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size115 MB
Obs294
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA73
human breast invasive ductal breast carcinoma 179 MB 513 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size179 MB
Obs513
silver H&E Open in Vitessce
spatial transcriptomics
Human breast
SPA75
human breast invasive ductal breast carcinoma 90 MB 284 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size90 MB
Obs284
silver H&E
Open in Vitessce
spatial transcriptomics
Human breast
SPA70
human breast invasive ductal breast carcinoma 214 MB 502 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size214 MB
Obs502
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA74
human breast invasive ductal breast carcinoma 179 MB 506 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size179 MB
Obs506
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA67
human breast invasive ductal breast carcinoma 151 MB 473 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size151 MB
Obs473
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA93
human breast invasive ductal breast carcinoma 180 MB 511 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size180 MB
Obs511
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA99
human breast invasive ductal breast carcinoma 231 MB 713 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size231 MB
Obs713
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA82
human breast invasive ductal breast carcinoma 182 MB 578 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size182 MB
Obs578
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA115
human breast invasive ductal breast carcinoma 117 MB 316 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size117 MB
Obs316
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA7
mouse brain 87 MB 237 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size87 MB
Obs237
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA117
human breast invasive ductal breast carcinoma 124 MB 334 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size124 MB
Obs334
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA58
human breast invasive ductal breast carcinoma 167 MB 480 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size167 MB
Obs480
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA106
human breast invasive ductal breast carcinoma 161 MB 428 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size161 MB
Obs428
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA55
human breast invasive ductal breast carcinoma 221 MB 687 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size221 MB
Obs687
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA2
human breast invasive ductal breast carcinoma 103 MB 251 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size103 MB
Obs251
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA52
human breast invasive ductal breast carcinoma 161 MB 340 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size161 MB
Obs340
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA101
human breast invasive ductal breast carcinoma 228 MB 691 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size228 MB
Obs691
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA53
human breast invasive ductal breast carcinoma 178 MB 402 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size178 MB
Obs402
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA57
human breast invasive ductal breast carcinoma 156 MB 478 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size156 MB
Obs478
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA98
human breast invasive ductal breast carcinoma 162 MB 441 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size162 MB
Obs441
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA8
mouse brain 90 MB 234 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size90 MB
Obs234
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA105
human breast invasive ductal breast carcinoma 136 MB 437 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size136 MB
Obs437
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA108
human breast invasive ductal breast carcinoma 126 MB 403 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size126 MB
Obs403
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA0
human breast invasive ductal breast carcinoma 94 MB 262 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size94 MB
Obs262
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA64
human breast invasive ductal breast carcinoma 188 MB 454 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size188 MB
Obs454
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA104
human breast invasive ductal breast carcinoma 195 MB 587 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size195 MB
Obs587
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA118
human breast invasive ductal breast carcinoma 125 MB 256 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size125 MB
Obs256
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA61
human breast invasive ductal breast carcinoma 128 MB 318 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size128 MB
Obs318
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA83
human breast invasive ductal breast carcinoma 174 MB 565 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size174 MB
Obs565
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA3
human breast invasive ductal breast carcinoma 110 MB 254 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size110 MB
Obs254
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA6
mouse brain 104 MB 281 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size104 MB
Obs281
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA107
human breast invasive ductal breast carcinoma 211 MB 432 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size211 MB
Obs432
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA96
human breast invasive ductal breast carcinoma 137 MB 464 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size137 MB
Obs464
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse brain
SPA9
mouse brain 90 MB 231 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuebrain
Size90 MB
Obs231
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human breast
SPA91
human breast invasive ductal breast carcinoma 155 MB 297 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissuebreast
Conditioninvasive ductal breast carcinoma
Size155 MB
Obs297
silver H&E Open in Vitessce

Cite this collection

doi.org/10.1126/science.aaf2403 ↗
BibTeX 
@article{St_hl_2016,
  title = {Visualization and analysis of gene expression in tissue sections by spatial transcriptomics},
  volume = {353},
  ISSN = {1095-9203},
  url = {http://dx.doi.org/10.1126/science.aaf2403},
  DOI = {10.1126/science.aaf2403},
  number = {6294},
  journal = {Science},
  publisher = {American Association for the Advancement of Science (AAAS)},
  author = {Ståhl, Patrik L. and Salmén, Fredrik and Vickovic, Sanja and Lundmark, Anna and Navarro, José Fernández and Magnusson, Jens and Giacomello, Stefania and Asp, Michaela and Westholm, Jakub O. and Huss, Mikael and Mollbrink, Annelie and Linnarsson, Sten and Codeluppi, Simone and Borg, Åke and Pontén, Fredrik and Costea, Paul Igor and Sahlén, Pelin and Mulder, Jan and Bergmann, Olaf and Lundeberg, Joakim and Frisén, Jonas},
  year = {2016},
  month = July,
  pages = {78–82}
}