Collections / A cellular hierarchy in melanoma uncouples growth and metastasis

A cellular hierarchy in melanoma uncouples growth and metastasis

Datasets3
Size~673 MB
AssayVisium
Samplemouse · skin of body
KindPublication
10.1038/s41586-022-05242-7 ↗
Download the whole collection
Python · lamindb 
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="doi-10.1038/s41586-022-05242-7")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
About the study

A cellular hierarchy in melanoma uncouples growth and metastasis.

Read the abstract at the source →
Member datasets · 3
Open in Vitessce
Visium
Mouse skin of body
NCBI689
mouse skin of body cutaneous melanoma 229 MB 4,992 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditioncutaneous melanoma
Size229 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse skin of body
NCBI687
mouse skin of body cutaneous melanoma 233 MB 4,992 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditioncutaneous melanoma
Size233 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse skin of body
NCBI688
mouse skin of body cutaneous melanoma 212 MB 4,992 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditioncutaneous melanoma
Size212 MB
Obs4,992
silver H&E Open in Vitessce

Cite this collection

doi.org/10.1038/s41586-022-05242-7 ↗
BibTeX 
@article{Karras_2022,
  title = {A cellular hierarchy in melanoma uncouples growth and metastasis},
  volume = {610},
  ISSN = {1476-4687},
  url = {http://dx.doi.org/10.1038/s41586-022-05242-7},
  DOI = {10.1038/s41586-022-05242-7},
  number = {7930},
  journal = {Nature},
  publisher = {Springer Science and Business Media LLC},
  author = {Karras, Panagiotis and Bordeu, Ignacio and Pozniak, Joanna and Nowosad, Ada and Pazzi, Cecilia and Van Raemdonck, Nina and Landeloos, Ewout and Van Herck, Yannick and Pedri, Dennis and Bervoets, Greet and Makhzami, Samira and Khoo, Jia Hui and Pavie, Benjamin and Lamote, Jochen and Marin-Bejar, Oskar and Dewaele, Michael and Liang, Han and Zhang, Xingju and Hua, Yichao and Wouters, Jasper and Browaeys, Robin and Bergers, Gabriele and Saeys, Yvan and Bosisio, Francesca and van den Oord, Joost and Lambrechts, Diether and Rustgi, Anil K. and Bechter, Oliver and Blanpain, Cedric and Simons, Benjamin D. and Rambow, Florian and Marine, Jean-Christophe},
  year = {2022},
  month = Sept,
  pages = {190–198}
}