Collections / 10x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard

10x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard

Datasets3
Size~12 GB
Assay10x Xenium
Samplehuman · multiple
KindOther
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="10x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Human bone marrow
human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard__hbonemarrow-nondiseased-section
human bone marrow 2.3 GB 84,518 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebone marrow
Size2.3 GB
Obs84,518
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human femur
human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard__hbone-nondiseased-section
human femur 6.4 GB 33,801 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuefemur
Size6.4 GB
Obs33,801
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human bone marrow
human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard__hbonemarrow-acute-lymphoid-leukemia-section
human bone marrow acute lymphoblastic leukemia 2.9 GB 225,906 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebone marrow
Conditionacute lymphoblastic leukemia
Size2.9 GB
Obs225,906
Magnification40x · 0.002 µm/px
silver H&E Open in Vitessce