Spatial omics data, standardized and ready to explore.

A curated, cloud-native catalog of spatial-omics datasets — one schema, every technology, linked straight to the data and interactive viewers.

Browse datasets →
10x XeniumVisium HDVisiumhumanmousecancer
5605
datasets
13
technologies
4
modalities
15
organisms
RNA · 5,589protein · 8Epigenomics · 6Metabolomics · 3

Featured by technology

All datasets →
Open in Vitessce
Visium
Human pancreas
GSM8641107
human pancreas pancreatic ductal adenocarcinoma 76 MB 3,571 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size76 MB
Obs3,571
Magnificationother · 3.651 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium HD
Human ovary
visium-hd-three-prime-ovarian-cancer-discovery-fresh-frozen
human ovary ovarian serous adenocarcinoma 4.3 GB 475,742 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size4.3 GB
Obs475,742
Magnification40x · 0.274 µm/px
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Mouse spinal cord
NCBI137
mouse spinal cord amyotrophic lateral sclerosis 81 MB 262 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Size81 MB
Obs262
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human corpus striatum
GSM9963633
human corpus striatum 518 MB 19,584 obs silver
Technology10x Xenium
Organismhuman
Tissuecorpus striatum
Size518 MB
Obs19,584
silver Open in Vitessce
Open in Vitessce
10x Atera
Human breast
atera-wta-ffpe-human-breast-cancer
human breast breast cancer 23 GB silver
Technology10x Atera
Organismhuman
Tissuebreast
Conditionbreast cancer
Size23 GB
silver Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372788
mouse liver 1.3 GB 140,698 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size1.3 GB
Obs140,698
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
MERFISH
Mouse brain
Zhuang-ABCA-1.010
mouse brain 4.8 MB 8,144 obs silver
TechnologyMERFISH
Organismmouse
Tissuebrain
Size4.8 MB
Obs8,144
silver Open in Vitessce
Open in Vitessce
PhenoCycler-Fusion
Human tonsil
S-BIAD2491:250902_Fresh_Slide4_Storageconditions_Scan1
human tonsil 3.5 GB 289,534 obs silver CC0 1.0
TechnologyPhenoCycler-Fusion
Organismhuman
Tissuetonsil
Size3.5 GB
Obs289,534
silver CC0 1.0 Open in Vitessce
Open in Vitessce
PhenoCycler
Human pancreas
S-BIAD859:6371v1:reg001
human pancreas type 1 diabetes mellitus 1.9 GB 50,567 obs silver CC0 1.0
TechnologyPhenoCycler
Organismhuman
Tissuepancreas
Conditiontype 1 diabetes mellitus
Size1.9 GB
Obs50,567
silver CC0 1.0 Open in Vitessce
Open in Vitessce
spatial ATAC-seq
Mouse brain
GSM6753041
mouse brain 16 MB bronze H&E NCBI GEO policy
Technologyspatial ATAC-seq
Organismmouse
Tissuebrain
Size16 MB
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
spatial CUT&Tag
Mouse brain
GSM6753042
mouse brain 8.6 MB bronze H&E NCBI GEO policy
Technologyspatial CUT&Tag
Organismmouse
Tissuebrain
Size8.6 MB
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
MALDI mass spectrometry imaging
Mouse brain
2019-03-28_09h18m57s
mouse brain 6.8 MB bronze H&E
TechnologyMALDI mass spectrometry imaging
Organismmouse
Tissuebrain
Size6.8 MB
bronze H&E Open in Vitessce
Open in Vitessce
CosMx
Human tonsil
protein_tonsil_25
human tonsil 1.2 GB 1,464,516 obs silver
TechnologyCosMx
Organismhuman
Tissuetonsil
Size1.2 GB
Obs1,464,516
silver Open in Vitessce