Collections / Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice

Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice

Datasets4
Size~1.3 GB
AssayVisium
Samplemouse · brain
KindOther
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse brain
NCBI807
mouse brain 354 MB 2,320 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size354 MB
Obs2,320
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI808
mouse brain 318 MB 2,359 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size318 MB
Obs2,359
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI806
mouse brain 327 MB 1,435 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size327 MB
Obs1,435
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI809
mouse brain 336 MB 1,554 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size336 MB
Obs1,554
bronze H&E Open in Vitessce