Collections / Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury
Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury
Datasets3
Size~716 MB
AssayVisium
Samplemouse · kidney
KindComparison
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="hest-integration-of-spatial-and-single-cell-transcriptomics-localizes-epithelial-immune-cross-talk-in-kidney-injury")
coll.ordered_artifacts.df() # the 3 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 3