Collections / A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer

A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer

Datasets4
Size~1.2 GB
AssayVisium
Samplehuman · urinary bladder
KindReplicates
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="hest-a-new-epithelial-cell-subpopulation-predicts-response-to-surgery-chemotherapy-and-immunotherapy-in-bladder-cancer")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human urinary bladder
NCBI601
human urinary bladder bladder transitional cell carcinoma 350 MB 1,469 obs silver H&E
TechnologyVisium
Organismhuman
Tissueurinary bladder
Conditionbladder transitional cell carcinoma
Size350 MB
Obs1,469
Magnification20x · 0.490 µm/px
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human urinary bladder
NCBI600
human urinary bladder bladder transitional cell carcinoma 286 MB 832 obs silver H&E
TechnologyVisium
Organismhuman
Tissueurinary bladder
Conditionbladder transitional cell carcinoma
Size286 MB
Obs832
Magnification20x · 0.488 µm/px
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human urinary bladder
NCBI603
human urinary bladder bladder transitional cell carcinoma 260 MB 768 obs silver H&E
TechnologyVisium
Organismhuman
Tissueurinary bladder
Conditionbladder transitional cell carcinoma
Size260 MB
Obs768
Magnification20x · 0.488 µm/px
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human urinary bladder
NCBI602
human urinary bladder bladder transitional cell carcinoma 287 MB 1,017 obs silver H&E
TechnologyVisium
Organismhuman
Tissueurinary bladder
Conditionbladder transitional cell carcinoma
Size287 MB
Obs1,017
Magnification20x · 0.488 µm/px
silver H&E Open in Vitessce