Collections / Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma
Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma
We profiled 6 patients with sinonasal-skull base adenoid cystic carcinoma by spatial transcriptomics (10x Genomics Visium) to characterize intratumoral heterogeneity and the immune landscape.
Datasets6
Size~174 MB
AssayVisium
Samplehuman · nasal cavity
KindOther
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse342687")
coll.ordered_artifacts.df() # the 6 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 6
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