Collections / geo-gse334924-camr-kidney

geo-gse334924-camr-kidney

Matched single-cell and Visium HD of a chronic antibody-mediated rejection kidney graft (human).

Datasets1
Size~518 MB
AssayVisium HD
Samplehuman · kidney
KindOther
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse334924-camr-kidney")
coll.ordered_artifacts.df()                 # the 1 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium HD
Human kidney
GSM9802211
human kidney kidney disorder 518 MB 205,569 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissuekidney
Conditionkidney disorder
Size518 MB
Obs205,569
silver H&E Open in Vitessce