Collections / Spatial transcriptomics of high grade serous ovarian cancers

Spatial transcriptomics of high grade serous ovarian cancers

Ovarian cancer is characterized by extensive genomic instability and intratumoral heterogeneity. In this study, we performed spatial transcriptomics on a cohort of high grade serous ovarian cancer with defined BRCA mutation status to investigate the relationship between genomic alterations, tumor architecture, and the tumor microenvironment.

Datasets38
Size~702 MB
AssayVisium
Samplehuman · ovary
KindReplicates
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse327312")
coll.ordered_artifacts.df()                 # the 38 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human ovary
GSM9653320
human ovary ovarian serous adenocarcinoma 16 MB 1,490 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size16 MB
Obs1,490
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653318
human ovary ovarian serous adenocarcinoma 31 MB 1,917 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size31 MB
Obs1,917
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653295
human ovary ovarian serous adenocarcinoma 9.4 MB 324 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size9.4 MB
Obs324
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653296
human ovary ovarian serous adenocarcinoma 11 MB 383 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size11 MB
Obs383
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653302
human ovary ovarian serous adenocarcinoma 18 MB 832 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size18 MB
Obs832
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653290
human ovary ovarian serous adenocarcinoma 25 MB 1,058 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size25 MB
Obs1,058
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653286
human ovary ovarian serous adenocarcinoma 18 MB 1,833 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size18 MB
Obs1,833
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653285
human ovary ovarian serous adenocarcinoma 23 MB 940 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size23 MB
Obs940
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653304
human ovary ovarian serous adenocarcinoma 24 MB 1,266 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size24 MB
Obs1,266
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653310
human ovary ovarian serous adenocarcinoma 20 MB 841 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size20 MB
Obs841
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653292
human ovary ovarian serous adenocarcinoma 15 MB 1,195 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size15 MB
Obs1,195
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653313
human ovary ovarian serous adenocarcinoma 20 MB 1,299 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size20 MB
Obs1,299
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653319
human ovary ovarian serous adenocarcinoma 34 MB 1,845 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size34 MB
Obs1,845
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653284
human ovary ovarian serous adenocarcinoma 18 MB 814 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size18 MB
Obs814
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653298
human ovary ovarian serous adenocarcinoma 13 MB 541 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size13 MB
Obs541
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653301
human ovary ovarian serous adenocarcinoma 9.9 MB 441 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size9.9 MB
Obs441
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653316
human ovary ovarian serous adenocarcinoma 9.0 MB 668 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size9.0 MB
Obs668
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653287
human ovary ovarian serous adenocarcinoma 19 MB 644 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size19 MB
Obs644
silver H&E Open in Vitessce
Visium
Human ovary
GSM9653311
human ovary ovarian serous adenocarcinoma 12 MB 689 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size12 MB
Obs689
silver H&E
Open in Vitessce
Visium
Human ovary
GSM9653300
human ovary ovarian serous adenocarcinoma 10 MB 475 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size10 MB
Obs475
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653293
human ovary ovarian serous adenocarcinoma 22 MB 987 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size22 MB
Obs987
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653288
human ovary ovarian serous adenocarcinoma 18 MB 624 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size18 MB
Obs624
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653312
human ovary ovarian serous adenocarcinoma 30 MB 1,675 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size30 MB
Obs1,675
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653289
human ovary ovarian serous adenocarcinoma 16 MB 811 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size16 MB
Obs811
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653314
human ovary ovarian serous adenocarcinoma 15 MB 1,081 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size15 MB
Obs1,081
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653315
human ovary ovarian serous adenocarcinoma 16 MB 1,223 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size16 MB
Obs1,223
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653294
human ovary ovarian serous adenocarcinoma 30 MB 1,304 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size30 MB
Obs1,304
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653309
human ovary ovarian serous adenocarcinoma 16 MB 569 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size16 MB
Obs569
silver H&E Open in Vitessce
Visium
Human ovary
GSM9653291
human ovary ovarian serous adenocarcinoma 21 MB 1,213 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size21 MB
Obs1,213
silver H&E
Open in Vitessce
Visium
Human ovary
GSM9653307
human ovary ovarian serous adenocarcinoma 24 MB 1,365 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size24 MB
Obs1,365
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653282
human ovary ovarian serous adenocarcinoma 13 MB 878 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size13 MB
Obs878
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653308
human ovary ovarian serous adenocarcinoma 15 MB 1,002 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size15 MB
Obs1,002
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653299
human ovary ovarian serous adenocarcinoma 11 MB 630 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size11 MB
Obs630
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653297
human ovary ovarian serous adenocarcinoma 28 MB 1,153 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size28 MB
Obs1,153
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653317
human ovary ovarian serous adenocarcinoma 20 MB 1,799 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size20 MB
Obs1,799
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653303
human ovary ovarian serous adenocarcinoma 19 MB 1,014 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size19 MB
Obs1,014
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human ovary
GSM9653305
human ovary ovarian serous adenocarcinoma 15 MB 924 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size15 MB
Obs924
silver H&E Open in Vitessce
Visium
Human ovary
GSM9653283
human ovary ovarian serous adenocarcinoma 18 MB 810 obs silver H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian serous adenocarcinoma
Size18 MB
Obs810
silver H&E

Cite this collection

No linked publication found — please cite the data source.