Collections / Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome]

Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome]

Small cell lung cancer (SCLC) typically displays a "cold" tumor microenvironment with a paucity of immune infiltrate. Neuroendocrine SCLC cells also profoundly repress MHC-I expression, rendering them vulnerable to NK cell-mediated cytotoxicity. Here, we confirm that neuroendocrine SCLC cells are sensitive to NK cell mediated attack, yet quantitative spatial profiling of the SCLC immune microenvironment in patient samples reveals that effector immune cells, including NK cells, are excluded from MHC-Ilow/neg SCLC regions. To study this biology, we develop dynamic single cell RNA sequencing of microphysiological immune tumor environments (DynaMITE-seq) and integrate findings with spatial transcriptomics in patient tissue, unveiling the microvasculature as a major checkpoint restricting NK cell extravasation/recruitment. We demonstrate that activation of vascular Stimulator of Interferon Genes (STING) signaling restores NK cell infiltration and killing of neuroendocrine SCLC, suggesting a strategy to overcome this key SCLC immunologic barrier and prime therapeutic response to DLL3-targeted CAR-NK cell therapy.

Datasets3
Size~150 MB
AssayVisium
Samplehuman · lung
KindOther
PMID:41791380 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse318867")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human lung
GSM9505082
human lung small cell lung carcinoma 90 MB 4,316 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size90 MB
Obs4,316
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9505080
human lung small cell lung carcinoma 32 MB 2,806 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size32 MB
Obs2,806
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9505081
human lung small cell lung carcinoma 28 MB 2,589 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsmall cell lung carcinoma
Size28 MB
Obs2,589
silver H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.