Collections / A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [Spatial Transcriptomics]

A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [Spatial Transcriptomics]

Immune checkpoint inhibitors have limited activity as monotherapy in biliary cancers. Granulocyte-macrophage colony-stimulating factor (GM-CSF) is a pleiotropic immune cell growth factor which resulted in prolonged survival when combined with ipilimumab in melanoma. We conducted a single-center, phase II trial to evaluate the efficacy and safety of combining GM-CSF with pembrolizumab in patients with advanced biliary cancers after prior standard chemotherapy but no prior immune checkpoint inhibitor. Pembrolizumab 200 mg was administered intravenously in 21-day cycles, along with two cycles of GM-CSF 250 µg subcutaneously days 1 through 14. The primary endpoint was objective response rate. Among 42 patients enrolled, the median age was 61 years, 67% had intrahepatic cholangiocarcinoma, 90% had stage IV disease, and 24% had underlying viral hepatitis. The confirmed objective response rate was 12% (95% confidence interval: 4, 26), including two patients with complete response, and 26% of patients had progression-free survival ongoing at 6 months. Treatment was well-tolerated with treatment-related grade 3-4 events in 7% and treatment-related serious adverse events in 10%. Tumor PD-L1 expression was present in 46% and was associated with a higher rate of 6-month progression-free survival. Paired tumor biopsies showed upregulation of CD8+ T cell populations and antigen processing pathways after the addition of GM-CSF. In conclusion, the addition of GM-CSF to pembrolizumab was well-tolerated but did not meet the pre-specified response rate for efficacy. A subset of patients experienced deep responses and prolonged stable disease. GM-CSF elicited changes in the tumor immune microenvironment that could guide future combination approaches.

Datasets12
Size~71 MB
AssayVisium
Samplehuman · bile duct
KindTime course
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316402 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse316402")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human bile duct
GSM9452690
human bile duct cholangiocarcinoma 4.5 MB 143 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size4.5 MB
Obs143
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452684
human bile duct cholangiocarcinoma 5.2 MB 431 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size5.2 MB
Obs431
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452688
human bile duct cholangiocarcinoma 5.9 MB 536 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size5.9 MB
Obs536
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452687
human bile duct cholangiocarcinoma 5.3 MB 245 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size5.3 MB
Obs245
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452692
human bile duct cholangiocarcinoma 6.0 MB 694 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size6.0 MB
Obs694
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452693
human bile duct cholangiocarcinoma 8.6 MB 886 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size8.6 MB
Obs886
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452689
human bile duct cholangiocarcinoma 7.9 MB 1,040 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size7.9 MB
Obs1,040
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452694
human bile duct cholangiocarcinoma 5.5 MB 1,274 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size5.5 MB
Obs1,274
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452686
human bile duct cholangiocarcinoma 6.0 MB 453 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size6.0 MB
Obs453
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452685
human bile duct cholangiocarcinoma 4.8 MB 145 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size4.8 MB
Obs145
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452691
human bile duct cholangiocarcinoma 6.4 MB 996 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size6.4 MB
Obs996
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human bile duct
GSM9452695
human bile duct cholangiocarcinoma 4.8 MB 548 obs silver H&E
TechnologyVisium
Organismhuman
Tissuebile duct
Conditioncholangiocarcinoma
Size4.8 MB
Obs548
silver H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.