Collections / Spatial transcriptomics of MRGPRX4-driven melanoma

Spatial transcriptomics of MRGPRX4-driven melanoma

Spatial transcriptomics was performed on skin samples from TyrCreER;MRGPRX4-ROSA26-stop-flox animals. Spatial analysis revealed mutiple, spatially defined melanoma states.

Datasets3
Size~35 MB
AssayVisium
Samplemouse · skin of body
KindOther
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313828 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse313828")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Visium
Mouse skin of body
GSM9376204
mouse skin of body melanoma 12 MB 462 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditionmelanoma
Size12 MB
Obs462
silver H&E
Open in Vitessce
Visium
Mouse skin of body
GSM9376205
mouse skin of body melanoma 12 MB 498 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditionmelanoma
Size12 MB
Obs498
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse skin of body
GSM9376206
mouse skin of body melanoma 11 MB 386 obs silver H&E
TechnologyVisium
Organismmouse
Tissueskin of body
Conditionmelanoma
Size11 MB
Obs386
silver H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.