Collections / Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]
Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]
MERFISH data from two young and two old WT C57BL/6J mouse livers, using a custom 500-gene panel targeted at aging and cancer-associated genes.
Datasets10
Size~6.5 GB
AssayVizgen MERSCOPE
Samplemouse · liver
KindTime course
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse313704")
coll.ordered_artifacts.df() # the 10 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 10
Mouse liver
GSM9372797
mouse liver 227 MB 141,524 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Obs141,524
silver NCBI GEO policy
Cite this collection
No linked publication found — please cite the data source.