Collections / Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]

Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]

MERFISH data from two young and two old WT C57BL/6J mouse livers, using a custom 500-gene panel targeted at aging and cancer-associated genes.

Datasets10
Size~6.5 GB
AssayVizgen MERSCOPE
Samplemouse · liver
KindTime course
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313704 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse313704")
coll.ordered_artifacts.df()                 # the 10 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372790
mouse liver 797 MB 163,186 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size797 MB
Obs163,186
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372788
mouse liver 1.3 GB 140,698 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size1.3 GB
Obs140,698
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372795
mouse liver 298 MB 105,825 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size298 MB
Obs105,825
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372789
mouse liver 714 MB 73,904 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size714 MB
Obs73,904
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372796
mouse liver 121 MB 114,324 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size121 MB
Obs114,324
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372794
mouse liver 572 MB 243,863 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size572 MB
Obs243,863
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372791
mouse liver 1.5 GB 177,494 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size1.5 GB
Obs177,494
silver NCBI GEO policy Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372797
mouse liver 227 MB 141,524 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size227 MB
Obs141,524
silver NCBI GEO policy
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372793
mouse liver 895 MB 237,950 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size895 MB
Obs237,950
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
Vizgen MERSCOPE
Mouse liver
GSM9372792
mouse liver 85 MB 54,197 obs silver NCBI GEO policy
TechnologyVizgen MERSCOPE
Organismmouse
Tissueliver
Size85 MB
Obs54,197
silver NCBI GEO policy Open in Vitessce

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