Collections / Spatial transcriptomics dataset of non-human primates

Spatial transcriptomics dataset of non-human primates

10X genomics Visium spatial RNA sequencing was performed on 18 non-human primate dorsal root ganglia (16 Macaca fascicularis, 1 Macaca mulatta, Papio anubis)

Datasets18
Size~231 MB
AssayVisium
Samplecrab-eating macaque · dorsal root ganglion
KindOther
PMID:42146464 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse313530")
coll.ordered_artifacts.df()                 # the 18 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369729
crab-eating macaque dorsal root ganglion 10 MB 4,989 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size10 MB
Obs4,989
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369736
crab-eating macaque dorsal root ganglion 11 MB 4,983 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size11 MB
Obs4,983
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369728
crab-eating macaque dorsal root ganglion 8.3 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size8.3 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369739
crab-eating macaque dorsal root ganglion 11 MB 4,991 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size11 MB
Obs4,991
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369733
crab-eating macaque dorsal root ganglion 13 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size13 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369743
crab-eating macaque dorsal root ganglion 8.5 MB 4,991 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size8.5 MB
Obs4,991
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369731
crab-eating macaque dorsal root ganglion 14 MB 4,991 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size14 MB
Obs4,991
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369730
crab-eating macaque dorsal root ganglion 11 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size11 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369740
crab-eating macaque dorsal root ganglion 13 MB 4,991 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size13 MB
Obs4,991
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369734
crab-eating macaque dorsal root ganglion 12 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size12 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369737
crab-eating macaque dorsal root ganglion 15 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size15 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369741
crab-eating macaque dorsal root ganglion 15 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size15 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369735
crab-eating macaque dorsal root ganglion 16 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size16 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369742
crab-eating macaque dorsal root ganglion 12 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size12 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369746
crab-eating macaque dorsal root ganglion 8.3 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size8.3 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369738
crab-eating macaque dorsal root ganglion 13 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size13 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369732
crab-eating macaque dorsal root ganglion 17 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size17 MB
Obs4,992
silver H&E Open in Vitessce
Open in Vitessce
Visium
Crab-eating macaque dorsal root ganglion
GSM9369747
crab-eating macaque dorsal root ganglion 22 MB 4,992 obs silver H&E
TechnologyVisium
Organismcrab-eating macaque
Tissuedorsal root ganglion
Size22 MB
Obs4,992
silver H&E Open in Vitessce

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