Collections / Spatial Transcriptomics of Human Fetal Lungs

Spatial Transcriptomics of Human Fetal Lungs

Spatial transcriptomic profiles were generated using lung tissue sections obtained from twelve prenatal human lung samples ranging in gestational age from 13 – 20 weeks, of which four were diagnosed with Trisomy 21, with defined hypoplasia.

Datasets12
Size~704 MB
AssayVisium
Samplehuman · lung
KindTime course
PMID:41484334 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse310610")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human lung
GSM9304479
human lung 26 MB 4,251 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size26 MB
Obs4,251
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304476
human lung 94 MB 4,411 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size94 MB
Obs4,411
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304484
human lung 67 MB 4,399 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size67 MB
Obs4,399
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304480
human lung 91 MB 4,146 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size91 MB
Obs4,146
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304477
human lung 73 MB 3,190 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size73 MB
Obs3,190
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304483
human lung 112 MB 4,558 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size112 MB
Obs4,558
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304481
human lung 11 MB 3,130 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size11 MB
Obs3,130
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304482
human lung 28 MB 3,251 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size28 MB
Obs3,251
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304473
human lung 7.7 MB 838 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size7.7 MB
Obs838
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304474
human lung 26 MB 3,792 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size26 MB
Obs3,792
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304478
human lung 96 MB 4,198 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size96 MB
Obs4,198
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM9304475
human lung 72 MB 3,271 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuelung
Size72 MB
Obs3,271
bronze H&E Open in Vitessce

Cite this collection

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