Collections / Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types

Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types

Spatially resolved vestibular ganglion neurons, WT vs Tmie-KO (mouse, Visium HD).

Datasets2
Size~1.0 GB
AssayVisium HD
Samplemouse · vestibular ganglion
KindComparison
10.1073/pnas.2530677123 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse309565-vestibular-ganglion")
coll.ordered_artifacts.df()                 # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}

Morphological and functional diversity of spatially resolved vestibular ganglion neuron cell types.

Vestibular ganglion neurons (VGNs) are the primary sensory neurons of the vestibular system, a relatively understudied sensory modality that is essential for maintaining visual stability and postural balance. Compared with other sensory systems, our understanding of the molecular heterogeneity of VGNs and its contribution to the diverse functions of the vestibular system remains limited. Using single-cell and spatial transcriptomics, we defined five transcriptionally distinct VGN cell types with discrete spatial distributions across the ganglion. These VGN cell types demonstrate organ-specific innervation patterns, target defined zones within each organ, and form characteristic synaptic endings. To probe their functional roles, we generated genetic tools that selectively label each VGN cell type. Leveraging these tools, we identified a cell type contributing to gravity sensing and otolith-dependent vestibulo-ocular reflexes, revealing a cell type-specific basis for modality-selective vestibular computations.

Open in Vitessce
Visium HD
Mouse vestibular ganglion
GSM9269270
mouse vestibular ganglion 691 MB 73,354 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuevestibular ganglion
Size691 MB
Obs73,354
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse vestibular ganglion
GSM9269271
mouse vestibular ganglion sensorineural hearing loss disorder 356 MB 33,534 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuevestibular ganglion
Conditionsensorineural hearing loss disorder
Size356 MB
Obs33,534
silver H&E Open in Vitessce

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