Collections / Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease

Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease

Spatiotemporal single-cell profiling of T cell clonal dynamics in human graft-versus-host disease (gut, Visium HD).

Datasets8
Size~4.0 GB
AssayVisium HD
Samplehuman · intestine
KindPublication
10.1038/s41590-026-02631-2 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse307215-gvhd-gut")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}

Spatiotemporal single-cell profiling reveals T cell clonal dynamics and phenotypic plasticity in human graft-versus-host disease.

Read the abstract at the source →
Open in Vitessce
Visium HD
Human intestine
GSM9219222
human intestine graft versus host disease 899 MB 592,669 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size899 MB
Obs592,669
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219223
human intestine graft versus host disease 221 MB 145,780 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size221 MB
Obs145,780
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219224
human intestine graft versus host disease 793 MB 550,017 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size793 MB
Obs550,017
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219225
human intestine graft versus host disease 432 MB 258,967 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size432 MB
Obs258,967
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219226
human intestine graft versus host disease 478 MB 222,220 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size478 MB
Obs222,220
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219227
human intestine graft versus host disease 501 MB 221,682 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size501 MB
Obs221,682
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219228
human intestine graft versus host disease 361 MB 168,857 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size361 MB
Obs168,857
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Human intestine
GSM9219229
human intestine graft versus host disease 450 MB 272,298 obs silver H&E
TechnologyVisium HD
Organismhuman
Tissueintestine
Conditiongraft versus host disease
Size450 MB
Obs272,298
silver H&E Open in Vitessce

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