Collections / Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification

Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification

Sex differences in aortic valve stenosis (AVS) progression have been documented clinically, but the underlying cellular mechanisms that drive sex-dependent calcification in aortic valve tissue remain poorly understood. Here, we harnessed single cell and spatial transcriptomics to investigate mechanisms that drive sex dependent spatial organization of valvular interstitial cell (VIC) and macrophage gene expression near calcification sites in human male and female aortic valve tissue. Histological analyses of aortic valve tissues stratified into healthy and diseased cohorts based on degree of calcification reveal increased valve calcification area in diseased male aortic valves relative to female, and increased valve thickening in diseased female aortic valves. Single cell sequencing analysis of heterogeneous valvular interstitial cell (VIC) populations reveals male-dependent gene expression of the Activator Protein 1 (AP-1) transcription factor complex. Spatial transcriptomics and RNA-FISH analyses of VIC populations near sites of calcification revealed male-dependent gene expression localization of Cartilage Oligomeric Matrix Protein (COMP), as opposed to diffuse COMP expression in female VICs. Cell-cell communication analyses were used to determine female-specific macrophage-VIC interactions. Secreted phosphoprotein 1 (also known as osteopontin) expressed from macrophages interacts with the cell surface receptor CD44 expressed by VICs to drive a pro-fibrotic phenotype in female aortic valves. Together, our results reveal sex differences in VIC and macrophage heterogeneity and functions near sites of calcification in aortic valve tissue. Our results highlight the importance of sex-based transcriptomics analyses to understand the cellular phenotypes responsible for causing sex differences in aortic valve fibrosis calcification.

Datasets8
Size~58 MB
AssayVisium
Samplehuman · aortic valve leaflet
KindOther
PMID:42206364 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse306288")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9196847
human aortic valve leaflet aortic valve stenosis 7.8 MB 1,264 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size7.8 MB
Obs1,264
Magnificationother · 3.595 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9196848
human aortic valve leaflet aortic valve stenosis 7.8 MB 1,658 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size7.8 MB
Obs1,658
Magnificationother · 3.598 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9759910
human aortic valve leaflet aortic valve stenosis 7.1 MB 1,713 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size7.1 MB
Obs1,713
Magnificationother · 3.479 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9759909
human aortic valve leaflet aortic valve stenosis 7.0 MB 1,801 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size7.0 MB
Obs1,801
Magnificationother · 3.318 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9759911
human aortic valve leaflet aortic valve stenosis 6.3 MB 1,512 obs bronze
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size6.3 MB
Obs1,512
bronze Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9196849
human aortic valve leaflet aortic valve stenosis 8.7 MB 1,693 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size8.7 MB
Obs1,693
Magnificationother · 3.595 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9759912
human aortic valve leaflet aortic valve stenosis 6.5 MB 1,244 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size6.5 MB
Obs1,244
Magnificationother · 3.420 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human aortic valve leaflet
GSM9196846
human aortic valve leaflet aortic valve stenosis 6.5 MB 1,573 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueaortic valve leaflet
Conditionaortic valve stenosis
Size6.5 MB
Obs1,573
bronze H&E Open in Vitessce

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