Collections / Spatial gene expression profiling of aortitis samples.

Spatial gene expression profiling of aortitis samples.

10X Xenium profiling of ascending aorta samples isolated from subjects with aortitis.

Datasets10
Size~7.4 GB
Assay10x Xenium
Samplehuman · ascending aorta
KindComparison
PMID:41948935 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse306150")
coll.ordered_artifacts.df()                 # the 10 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194125
human ascending aorta IgG4-related disease 1.4 GB 59,298 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
ConditionIgG4-related disease
Size1.4 GB
Obs59,298
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9485375
human ascending aorta aortic valve stenosis 665 MB 25,952 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditionaortic valve stenosis
Size665 MB
Obs25,952
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194122
human ascending aorta temporal arteritis 975 MB 49,028 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size975 MB
Obs49,028
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9485374
human ascending aorta aortic valve stenosis 1.1 GB 28,664 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditionaortic valve stenosis
Size1.1 GB
Obs28,664
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194120
human ascending aorta temporal arteritis 200 MB 58,078 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size200 MB
Obs58,078
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194124
human ascending aorta temporal arteritis 1.0 GB 45,053 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size1.0 GB
Obs45,053
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9485373
human ascending aorta aortic valve stenosis 128 MB 35,491 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditionaortic valve stenosis
Size128 MB
Obs35,491
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194123
human ascending aorta temporal arteritis 945 MB 38,722 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size945 MB
Obs38,722
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194121
human ascending aorta temporal arteritis 941 MB 45,520 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size941 MB
Obs45,520
bronze Open in Vitessce
Open in Vitessce
10x Xenium
Human ascending aorta
GSM9194119
human ascending aorta temporal arteritis 180 MB 55,867 obs bronze
Technology10x Xenium
Organismhuman
Tissueascending aorta
Conditiontemporal arteritis
Size180 MB
Obs55,867
bronze Open in Vitessce

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