Collections / A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum

A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum

Spatial & temporal transcriptomic atlas of mouse intestinal regeneration in the jejunum (Visium HD, radiation time-course).

Datasets4
Size~4.2 GB
AssayVisium HD
Samplemouse · jejunum
KindComparison
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse303705-mouse-intestine-regeneration")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium HD
Mouse jejunum
GSM9134407
mouse jejunum radiation-induced disorder 319 MB 415,262 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuejejunum
Conditionradiation-induced disorder
Size319 MB
Obs415,262
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse jejunum
GSM9134408
mouse jejunum radiation-induced disorder 1.5 GB 397,346 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuejejunum
Conditionradiation-induced disorder
Size1.5 GB
Obs397,346
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse jejunum
GSM9134409
mouse jejunum radiation-induced disorder 988 MB 398,382 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuejejunum
Conditionradiation-induced disorder
Size988 MB
Obs398,382
silver H&E Open in Vitessce
Open in Vitessce
Visium HD
Mouse jejunum
GSM9134410
mouse jejunum radiation-induced disorder 1.5 GB 433,274 obs silver H&E
TechnologyVisium HD
Organismmouse
Tissuejejunum
Conditionradiation-induced disorder
Size1.5 GB
Obs433,274
silver H&E Open in Vitessce