Collections / A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum
A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum
Spatial & temporal transcriptomic atlas of mouse intestinal regeneration in the jejunum (Visium HD, radiation time-course).
Datasets4
Size~4.2 GB
AssayVisium HD
Samplemouse · jejunum
KindComparison
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse303705-mouse-intestine-regeneration")
coll.ordered_artifacts.df() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 4