Collections / Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction

Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction

Myocardial infarctions (MI) affect 805,000 people per year in the United States. To mitigate the pathological effects of MI, we have developed and investigated pro-reparative decellularized extracellular matrix (ECM) biomaterials: an intravascularly infusible ECM (iECM). However, no one has ever utilized single cell and spatially resolved transcriptomics to further probe how systemically administered infusible ECM can elicit pro-repair in an MI model. Thus, we utilize spatial transcriptomics and single nucleus RNA sequencing (snRNAseq) to further measure pro-repair in various cell types, and thus validate these findings with spectral flow cytometry.With iECM, we found pro-reparative macrophage activation, fibroblast remodeling, increased vasculature development, and cardioprotection. Thus, we depict the pro-reparative nature of decellularized ECM biomaterials on cardiac cell types and elucidate previously undiscovered therapeutic pathways, further demonstrating infusible ECM’s potential as an MI therapy.

Datasets12
Size~368 MB
AssayVisium
Samplerat · heart
KindComparison
PMID:41292930 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse299772")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Rat heart
GSM9045881
rat heart myocardial infarction 39 MB 3,269 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size39 MB
Obs3,269
Magnificationother · 4.036 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045890
rat heart myocardial infarction 21 MB 3,361 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size21 MB
Obs3,361
Magnificationother · 3.677 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045883
rat heart myocardial infarction 33 MB 4,465 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size33 MB
Obs4,465
Magnificationother · 3.944 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045887
rat heart myocardial infarction 24 MB 3,709 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size24 MB
Obs3,709
Magnificationother · 3.663 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045885
rat heart myocardial infarction 29 MB 3,787 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size29 MB
Obs3,787
Magnificationother · 3.806 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045891
rat heart myocardial infarction 28 MB 4,458 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size28 MB
Obs4,458
Magnificationother · 3.882 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045889
rat heart myocardial infarction 27 MB 3,675 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size27 MB
Obs3,675
Magnificationother · 4.136 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045884
rat heart myocardial infarction 24 MB 3,553 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size24 MB
Obs3,553
Magnificationother · 4.314 µm/px
bronze H&E Open in Vitessce
Visium
Rat heart
GSM9045888
rat heart myocardial infarction 51 MB 4,288 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size51 MB
Obs4,288
bronze H&E
Open in Vitessce
Visium
Rat heart
GSM9045882
rat heart myocardial infarction 28 MB 3,880 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size28 MB
Obs3,880
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045892
rat heart myocardial infarction 35 MB 4,231 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size35 MB
Obs4,231
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat heart
GSM9045886
rat heart myocardial infarction 30 MB 3,685 obs bronze H&E
TechnologyVisium
Organismrat
Tissueheart
Conditionmyocardial infarction
Size30 MB
Obs3,685
bronze H&E Open in Vitessce

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