Collections / Mouse uterine gene expressions during decidual processes [Visium]

Mouse uterine gene expressions during decidual processes [Visium]

Spatiotemporal uterine gene expressions during peri-implantation period at pregnancy day 4 and 6 was investigated by scRNA-seq and Visium spatial transcriptome.

Datasets4
Size~85 MB
AssayVisium
Samplemouse · uterus
KindComparison
PMID:42154563 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse296581")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse uterus
GSM8972900
mouse uterus 14 MB 478 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size14 MB
Obs478
Magnificationother · 3.622 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
GSM8972901
mouse uterus 21 MB 946 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size21 MB
Obs946
Magnificationother · 3.621 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
GSM8972902
mouse uterus 20 MB 854 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size20 MB
Obs854
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
GSM8972899
mouse uterus 30 MB 1,530 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size30 MB
Obs1,530
bronze H&E Open in Vitessce

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