Collections / Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity
Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity
Spatial transcriptomics experiments were performed on human patient pre-treatment biopsies for patients with either NSCLC or DLBCL. This was part of a larger study on pan-tumor spatial biology organization.
Datasets18
Size~2.4 GB
AssayVisium
Samplehuman · multiple
KindTime course
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse292299")
coll.ordered_artifacts.df() # the 18 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 18
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