Collections / IL-32 producing CD8+ memory T cells and Tregs define the IDO1 / PD-L1 niche in human cutaneous leishmaniasis skin lesions

IL-32 producing CD8+ memory T cells and Tregs define the IDO1 / PD-L1 niche in human cutaneous leishmaniasis skin lesions

Human cutaneous leishmaniasis (CL) is characterised by chronic skin pathology. Experimental and clinical data suggest that immune checkpoints (ICs) play a crucial role in disease outcome but the cellular and molecular niches that facilitate IC expression during leishmaniasis are ill-defined. We previously showed that in Sri Lankan patients with CL, indoleamine 2,3-dioxygenase 1 (IDO1) and programmed death-ligand 1 (PD-L1) are enriched in lesion skin and that reduced PD-L1 expression early after treatment onset predicted cure rate following antimonial therapy. Here, we use spatial cell interaction mapping to identify IL-32-expressing CD8+ memory cells and regulatory T cells as key components of the IDO1 / PD-L1 niche in Sri Lankan CL patients and in patients with distinct forms of dermal leishmaniasis in Brazil and India. Furthermore, the abundance of IL-32+ cells and IL-32+CD8+ T cells at treatment onset was prognostic for rate of cure in Sri Lankan patients. This study provides a unique spatial perspective on the mechanisms underpinning IC expression during CL and a novel route to identify additional biomarkers of treatment response.

Datasets12
Size~181 MB
AssayVisium
Samplehuman · skin of body
KindOther
PMID:40371647 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse290027")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human skin of body
GSM8804028
human skin of body cutaneous leishmaniasis 9.3 MB 343 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size9.3 MB
Obs343
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804037
human skin of body cutaneous leishmaniasis 44 MB 3,477 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size44 MB
Obs3,477
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804030
human skin of body cutaneous leishmaniasis 13 MB 873 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size13 MB
Obs873
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804034
human skin of body cutaneous leishmaniasis 33 MB 2,609 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size33 MB
Obs2,609
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804031
human skin of body cutaneous leishmaniasis 8.5 MB 324 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size8.5 MB
Obs324
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804029
human skin of body cutaneous leishmaniasis 6.8 MB 258 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size6.8 MB
Obs258
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804032
human skin of body cutaneous leishmaniasis 7.8 MB 346 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size7.8 MB
Obs346
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804033
human skin of body cutaneous leishmaniasis 5.7 MB 274 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size5.7 MB
Obs274
silver H&E Open in Vitessce
Visium
Human skin of body
GSM8804035
human skin of body cutaneous leishmaniasis 24 MB 2,940 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size24 MB
Obs2,940
silver H&E
Open in Vitessce
Visium
Human skin of body
GSM8804039
human skin of body cutaneous leishmaniasis 6.6 MB 382 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size6.6 MB
Obs382
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804038
human skin of body cutaneous leishmaniasis 5.8 MB 490 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size5.8 MB
Obs490
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM8804036
human skin of body cutaneous leishmaniasis 16 MB 929 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditioncutaneous leishmaniasis
Size16 MB
Obs929
silver H&E Open in Vitessce

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