Visium Mouse placenta
GSM8785671
mouse placenta 34 MB 2,898 obs silver H&E
TechnologyVisium
Organismmouse
Tissueplacenta
Obs2,898
silver H&E
Collections / Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]
Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]
Pregnancy is one of the most important processes for mammals, which is deeply controlled by the immune system. We performed spatial transcriptomics to profile mouse placentas from semi-allogeneic and syngeneic pregnancies at E12.5 to elucidate differences between these types of pregnancies. Our analysis showed that erythroid cells were the major immunoregulatory population in both types of pregnancies.
Datasets3
Size~93 MB
AssayVisium
Samplemouse · placenta
KindOther
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse289170")
coll.ordered_artifacts.df() # the 3 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}Member datasets · 3
Visium 
Visium Mouse placenta
GSM8785670
mouse placenta 31 MB 3,569 obs silver H&E
TechnologyVisium
Organismmouse
Tissueplacenta
Obs3,569
silver H&E
Visium Mouse placenta
GSM8785666
mouse placenta 29 MB 2,599 obs silver H&E
TechnologyVisium
Organismmouse
Tissueplacenta
Obs2,599
silver H&E
Cite this collection
No linked publication found — please cite the data source.