Collections / Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages

Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages

Cd1 wildetype mice, Wt1-CreER;Rosa-mTmG mice, and Wt1-CreER;Rosa-DTA mice derived hearts were isolated and directly embeded. The hearts were then sectioned for spatial transcriptomic analysis.

Datasets8
Size~112 MB
AssayVisium
Samplemouse · heart
KindOther
PMID:42141139 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse282547")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse heart
GSM8645799
mouse heart 12 MB 456 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size12 MB
Obs456
Magnificationother · 3.767 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645796
mouse heart 14 MB 664 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size14 MB
Obs664
Magnificationother · 3.509 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645794
mouse heart 13 MB 621 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size13 MB
Obs621
Magnificationother · 3.504 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645800
mouse heart 6.8 MB 243 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size6.8 MB
Obs243
Magnificationother · 3.763 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645795
mouse heart 23 MB 1,293 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size23 MB
Obs1,293
Magnificationother · 3.515 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645798
mouse heart 13 MB 849 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size13 MB
Obs849
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645793
mouse heart 15 MB 741 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size15 MB
Obs741
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM8645797
mouse heart 14 MB 708 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size14 MB
Obs708
Magnificationother · 3.770 µm/px
bronze H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.