Collections / Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages
Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages
Cd1 wildetype mice, Wt1-CreER;Rosa-mTmG mice, and Wt1-CreER;Rosa-DTA mice derived hearts were isolated and directly embeded. The hearts were then sectioned for spatial transcriptomic analysis.
Datasets8
Size~112 MB
AssayVisium
Samplemouse · heart
KindOther
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse282547")
coll.ordered_artifacts.df() # the 8 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 8
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