Visium Mouse liver
GSM8599604
mouse liver drug-induced liver injury 24 MB 2,178 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Obs2,178
silver H&E
Collections / Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.
Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.
Analysis of single cell RNA-seq, CITE-seq data and bulk RNA-seq data on cells isolated from the livers of mice following PBS and APAP (paracetamol/acetaminophen) administration. Spatial Transcriptomics analysis was performed using 10x Visium platform on mouse livers 48hrs post PBS or APAP administration. We also analysed single cell RNA-seq data on CD64+F4/80+ macrophages isolated from the livers of Trem2 fl/fl mice and CD64CRE Trem2 fl/fl mice.
Datasets3
Size~55 MB
AssayVisium
Samplemouse · liver
KindComparison
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse280515")
coll.ordered_artifacts.df() # the 3 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}Member datasets · 3
Visium 
Visium Mouse liver
GSM8599603
mouse liver drug-induced liver injury 16 MB 1,272 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Obs1,272
silver H&E
Visium Mouse liver
GSM8599602
mouse liver 15 MB 1,790 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Obs1,790
silver H&E
Cite this collection
No linked publication found — please cite the data source.