Collections / INFLAMMATION-INDUCED SENESCENT-LIKE GLIA REWIRE CELLULAR NETWORKS IN MULTIPLE SCLEROSIS [Spatial transcriptomic]

INFLAMMATION-INDUCED SENESCENT-LIKE GLIA REWIRE CELLULAR NETWORKS IN MULTIPLE SCLEROSIS [Spatial transcriptomic]

In multiple sclerosis (MS), chronic compartmentalized inflammation is thought to drive relentless clinical deterioration. Here, we investigate the link between unresolved parenchymal inflammation and cellular senescence in MS progression. Single-cell transcriptomic analysis of human brain tissue reveals an accumulation of senescent-like glial cells in diseased white matter, especially in chronic active lesions, and to a lesser extent in the cortex. Spatial transcriptomics show gradients of senescence-like signatures extending from lesion cores to periplaque regions, alongside rewired cellular networks. Experimental induction of senescence in MS hiPSC-derived neural organoids demonstrates that microglia are especially vulnerable to inflammation-induced senescence, which can be partially rescued by CNS-penetrant anti-inflammatory drugs. At the patient level (n=500), increased 3T MRI-estimated brain-age is observed, especially in individuals with more than four chronic active lesions. These findings suggest that chronic inflammation might accelerate senescence-like processes, potentially contributing to disease progression, and that its modulation might help limit further propagation.

Datasets12
Size~135 MB
AssayVisium
Samplehuman · brain white matter
KindReplicates
PMID:41006208 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse277435")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human brain white matter
GSM8522424
human brain white matter multiple sclerosis 13 MB 4,395 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size13 MB
Obs4,395
Magnificationother · 3.796 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522432
human brain white matter multiple sclerosis 11 MB 4,340 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size11 MB
Obs4,340
Magnificationother · 3.681 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522431
human brain white matter multiple sclerosis 11 MB 4,141 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size11 MB
Obs4,141
Magnificationother · 3.681 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522430
human brain white matter multiple sclerosis 9.1 MB 3,986 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size9.1 MB
Obs3,986
Magnificationother · 3.535 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522425
human brain white matter multiple sclerosis 13 MB 3,912 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size13 MB
Obs3,912
Magnificationother · 3.628 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522427
human brain white matter multiple sclerosis 9.8 MB 3,504 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size9.8 MB
Obs3,504
Magnificationother · 3.629 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522435
human brain white matter multiple sclerosis 6.5 MB 2,195 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size6.5 MB
Obs2,195
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522434
human brain white matter multiple sclerosis 16 MB 3,905 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size16 MB
Obs3,905
Magnificationother · 3.681 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522426
human brain white matter multiple sclerosis 11 MB 4,163 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size11 MB
Obs4,163
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522433
human brain white matter multiple sclerosis 9.4 MB 3,512 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size9.4 MB
Obs3,512
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522428
human brain white matter multiple sclerosis 11 MB 3,551 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size11 MB
Obs3,551
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human brain white matter
GSM8522429
human brain white matter multiple sclerosis 14 MB 3,735 obs bronze H&E
TechnologyVisium
Organismhuman
Tissuebrain white matter
Conditionmultiple sclerosis
Size14 MB
Obs3,735
bronze H&E Open in Vitessce

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