Collections / 10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)

10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)

We obtained transcriptome profiling of small intestine from mice fed control diet (CD) or stearic acid-rich HFD by using 10X Visium.

Datasets2
Size~117 MB
AssayVisium
Samplemouse · small intestine
KindComparison
PMID:41616823 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse277106")
coll.ordered_artifacts.df()                 # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse small intestine
GSM8514377
mouse small intestine 62 MB 3,952 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Size62 MB
Obs3,952
Magnificationother · 8.144 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse small intestine
GSM8514376
mouse small intestine 55 MB 3,894 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Size55 MB
Obs3,894
bronze H&E Open in Vitessce

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