Collections / 10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)
10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)
We obtained transcriptome profiling of small intestine from mice fed control diet (CD) or stearic acid-rich HFD by using 10X Visium.
Datasets2
Size~117 MB
AssayVisium
Samplemouse · small intestine
KindComparison
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse277106")
coll.ordered_artifacts.df() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 2
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