Visium Mouse lung
GSM8457567
mouse lung coccidioidomycosis 26 MB 4,991 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuelung
Conditioncoccidioidomycosis
Obs4,991
Magnificationother · 5.450 µm/px
bronze H&E
Collections / Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii
Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii
Coccidioidomycosis, or Valley Fever, is a lung disease caused by inhaling Coccidioides fungi, prevalent in the Southwestern U.S., Mexico, and parts of Central and South America. Climate change is contributing to the spread of this disease. Many cases are asymptomatic, some are often misdiagnosed, and a small subset can progress to severe illness. To better understand lung responses during late Coccidioides infection, we used 10x Visium spatial transcriptomics. We analyzed non-infected lung (D0) and infected lung at 14 days post-infection (D14).
Datasets2
Size~64 MB
AssayVisium
Samplemouse · lung
KindTime course
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse274767")
coll.ordered_artifacts.df() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}Member datasets · 2
Visium 
Visium Mouse lung
GSM8457566
mouse lung 37 MB 4,936 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuelung
Obs4,936
Magnificationother · 5.485 µm/px
bronze H&E
Cite this collection
No linked publication found — please cite the data source.