Collections / Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma
Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma
Squamous cell carcinoma arising from mature teratoma (SCC-MT) is one of the rare ovarian malignancies. Therefore, the molecular background of SCC-MT remains largely unelucidated. In this study, we performed the spatial transcriptomics for SCC-MT.
Datasets4
Size~98 MB
AssayVisium
Samplehuman · ovary
KindReplicates
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse272833")
coll.ordered_artifacts.df() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 4
Human ovary
GSM8413263
human ovary ovarian squamous cell carcinoma 32 MB 2,597 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueovary
Conditionovarian squamous cell carcinoma
Obs2,597
bronze H&E
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