Collections / Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium)

Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium)

Liver zonation remains a critical aspect of understanding its response to acute injury. This study investigates the impact of acetaminophen-induced acute liver injury on zonal heterogeneity during early phases of injury. Through Ki67 staining, we observed a transient pause in proliferation specifically among mid-lobular hepatocytes during the initiation phase. Using spatial transcriptomics, immunostaining, and in vivo assays, we elucidated that mid-lobular hepatocytes upregulate the Atf4-Ddit3 axis, offering temporary protection at the cost of reduced proliferation mediated by Btg2. Our findings underscore the unique zonal metabolism of acetaminophen as a determinant of differential tissue responses across lobular regions. This study highlights how distinct liver zones exhibit varied responses during the early stages of acute injury, with mid-lobular hepatocytes showing an integrated stress response characterized by protective mechanisms that temporarily suppress proliferation.

Datasets4
Size~81 MB
AssayVisium
Samplemouse · liver
KindOther
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272564 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse272564")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse liver
GSM8404656
mouse liver drug-induced liver injury 25 MB 1,655 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Size25 MB
Obs1,655
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse liver
GSM8404654
mouse liver drug-induced liver injury 19 MB 1,723 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Size19 MB
Obs1,723
Magnificationother · 3.502 µm/px
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse liver
GSM8404653
mouse liver drug-induced liver injury 21 MB 1,483 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Size21 MB
Obs1,483
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse liver
GSM8404655
mouse liver drug-induced liver injury 16 MB 1,585 obs silver H&E
TechnologyVisium
Organismmouse
Tissueliver
Conditiondrug-induced liver injury
Size16 MB
Obs1,585
silver H&E Open in Vitessce

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