Collections / Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)

Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)

Unique microglial states have been identified in Alzheimer’s disease (AD) model mice and postmortem AD brains. Although it has been well documented that amyloid-β accumulation induces the alteration of microglial states, the relationship between tau pathology and microglial states remains incompletely understood because of a lack of suitable AD models. In the present study, we generated a novel AD model mouse by the intracerebral administration of tau purified from human brains with primary age-related tauopathy into AppNL-G-F/MAPT double knock-in (dKI) mice.

Datasets4
Size~212 MB
AssayVisium
Samplemouse · brain
KindOther
PMID:39592224 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse270382")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse brain
GSM8341551
mouse brain Alzheimer disease 51 MB 3,047 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size51 MB
Obs3,047
Magnificationother · 3.684 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8341552
mouse brain Alzheimer disease 55 MB 3,040 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size55 MB
Obs3,040
Magnificationother · 3.685 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8341553
mouse brain Alzheimer disease 53 MB 2,610 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size53 MB
Obs2,610
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8341554
mouse brain Alzheimer disease 53 MB 2,581 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size53 MB
Obs2,581
bronze H&E Open in Vitessce

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