Collections / Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome]

Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome]

Folate is crucial for diverse biological processes including neurogenesis. While folate supplementation during pregnancy is standard for preventing neural tube defects (NTDs), concerns are growing over the potential risks of excessive maternal intake. In this study, we employed spatial transcriptomics and single-nucleus multi-omics techniques to investigate the impact of increased maternal folate intake on offspring brain development. Elevated folate intake broadly affected gene pathways linked to neurogenesis and neuronal axon myelination across multiple brain regions. Furthermore, specific gene expression alterations related to learning and memory processes emerged in thalamic and ventricular regions. Single-nucleus multi-omics analysis revealed that maturing excitatory neurons in dentate gyrus are particularly vulnerable to suboptimal maternal folate intake. Aberrant gene expression and chromatin accessibility changes were primarily centered on pathways governing ribosomal biogenesis, which is critical for synaptic formation. Altogether, our findings provide novel insights into how excessive maternal folate supplementation affects offspring brain development, notably by influencing gene expression and chromatin accessibility.

Datasets4
Size~247 MB
AssayVisium
Samplemouse · brain
KindComparison
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269543 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse269543")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse brain
GSM8321866
mouse brain 58 MB 3,350 obs silver H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size58 MB
Obs3,350
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8321864
mouse brain 57 MB 3,316 obs silver H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size57 MB
Obs3,316
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8321863
mouse brain 81 MB 3,602 obs silver H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size81 MB
Obs3,602
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8321865
mouse brain 51 MB 3,202 obs silver H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size51 MB
Obs3,202
silver H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.